The following is not a definite root cause, but just an idea of what you could be experiencing. You are using very high efficiency speakers (96 db) which have a silk dome tweeter (soft dome tweeter). The soft-dome tweeters are sometimes more forgiving and not as revealing or transparent as other hard-dome tweeters. Additionally, the tube in the Nagra dac -might- be softening the sound and resolution as well.
It could very well be that your system is not high resolution enough to show the difference between the NUC and the Aurender N200. If you are using a linear power supply on the NUC, then it will be even harder to hear the difference.
Once again, just an idea of what you could be experiencing, but hard to prove.