Static and popping sound from my new apollo

I just hooked up my new apollo cd player and during playback on certain tracks I'm getting a small but noticable amount of crackling sound. Kinda like I was spinning a record. There's dead silence between tracks it's only at either the very begining of the song or at the end as the song is fading out. I even heard it on a live recording on a Patricia Barber XRCD In between her volcals. It's only commimg from the left speaker and I switched speakers to eliminate that being the problem. I did try and noticed the crackling in a brand new cd never played before. One other note it's always in the same spot on the song when I hear it and play it back to hear it again. It's actaully kinda embarassing to have a killer set-up and a friend tells me his close and play doesn't do that. Loop set-up:Bryston amp/ B&K ref 30/ Rega DAC/ Rega Apollo and Magnepan 3.6's
Thanks