Definitely run both lines on the same phase/leg otherwise you will most surely get hum form your system. If you don't have enough room on one side, you can just move breaker's around. One of the best "upgrades" i did for my system was completely reconfiguring the electrical panel, tightening up all the connections etc. You can see a more detailed description on my systems page here on AG.
Good Listening
Peter
Good Listening
Peter