It is a bit hard to figure out from this end, of course. I still think you may have a gain mismatch (2.8V into a power amp with a 1.0V sensitivity). It does depend a bit on the design of the amplifier's gain control. Does it come after an input stage? If so, that input stage could still be driven into clipping. A cheap experiment would be to get some inline attenuators from Parts Express: https://www.parts-express.com/harrison-labs-12-db-rca-line-level-audio-attenuator-pair--266-244
Short of using a scope to inspect the signal, you could also listen to a cd with different levels of a test signal, and listen if and when the sound starts to distort.
Alternatively, what you hear with the digital source may in fact be perfectly fine, but unusual for your ears. You hear a difference with your analogue sources, but why would they be superior? Go to a live concert of a symphony orchestra and you will at times hear the pretty harsh sound that some would call 'digital', but that is just the real thing. Do not forget that FM radio is seriously challenged sonically, with high levels of distortion, reduced high frequency response, and limited channel separation. The same is true for vinyl. Both may sound nice and warm, but it is not quite the real thing.
Short of using a scope to inspect the signal, you could also listen to a cd with different levels of a test signal, and listen if and when the sound starts to distort.
Alternatively, what you hear with the digital source may in fact be perfectly fine, but unusual for your ears. You hear a difference with your analogue sources, but why would they be superior? Go to a live concert of a symphony orchestra and you will at times hear the pretty harsh sound that some would call 'digital', but that is just the real thing. Do not forget that FM radio is seriously challenged sonically, with high levels of distortion, reduced high frequency response, and limited channel separation. The same is true for vinyl. Both may sound nice and warm, but it is not quite the real thing.