I can’t envision a design in which a shorting plug applied to an RCA **input** would cause any problems. Consider the fact that the essentially zero ohm impedance presented to the input by a shorting plug is not greatly different than the very low output impedances (e.g., 10 ohms or perhaps even less in some cases) of some components that might be used to drive that input.
@almarg Sorry to belabor this. I’m merely operating out an abundance of caution in this regard :)
I take your statement to *include* an LFE subwoofer RCA input as well as a phono input. Therefore, *any* type or kind of RCA input where audio is concerned would fall under the same umbrella where RCA shorting of input jacks are concerned.
And, I surmise the most benefit (if any benefit can be realized at all), would or should be from a phono input, which in the case of my amp has a phono input impedance of 47k Ohms, according to manufacturer spec.
EDIT:
I also realize that operating out an abundance of caution might mean do nothing in this regard :)