You should definitely hear a difference from 100 ohms to 47k. Sounds like something's off in the loading setup, though I can't guess what that might be. The signal loss from 100 ohms loading, on the 38 ohm SLR or LPS coils, is almost 3 dB (versus 47k) - which alone should be extremely audible, and will surely come with frequency response aberrations on top of that.
Signal Loss at 100 ohms:
20 * log(100 ohms / (100 ohms + 38 ohms)) = -2.8 dB
Signal Loss at 47k:
20 * log(47000 / (47000 + 38)) = -0.007 dB
Personally, I felt my LPS to be lackluster with 10x SUTs loading it around 470. It did much better, and came alive with an active JFET stage loading at 1000 ohms.