Peter, Most linear tracking arms I've seen have slotted head shells. So they can be adjusted to compensate mis-alignment by other adjustments, like VTA, and VTF. Most have a protractor with a straight line (instead of an arc), with lines that are 90 degrees off the main line to line up the cantilever (zenith).
One exception is the Thales Simplicity. With the design of the Simplicity you would have to take the head shell off, to align it, in it's jig. This is not ideal because you can not align the stylus with a load on the suspension. Since we know that different VTF will change the alignment (overhang), there is no way to know for sure if it's perfect or not.
As said above, if the alignment is off on a linear tracker the zenith will be off a little all the way across the record. Not sure how audible that is but I will look at Dgarretson's link about that.
One exception is the Thales Simplicity. With the design of the Simplicity you would have to take the head shell off, to align it, in it's jig. This is not ideal because you can not align the stylus with a load on the suspension. Since we know that different VTF will change the alignment (overhang), there is no way to know for sure if it's perfect or not.
As said above, if the alignment is off on a linear tracker the zenith will be off a little all the way across the record. Not sure how audible that is but I will look at Dgarretson's link about that.