I agree with sugar mostly. The separate (crossover) controls are for the "III" units only. If you have both types of inputs connected as described during HT the low level input gets the .1 signal from the pre/pro AND the high level inputs are alive as well and will reinforce the left/right mains. This is a good thing for HT.
For two channel there will (should) be no signal on the low level input so all is well. Just the main speakers are reinforced as you have dialed in.
For two channel there will (should) be no signal on the low level input so all is well. Just the main speakers are reinforced as you have dialed in.