If i can't transfer a non mac formatted disc to another mac formatted disc with the superduper or clone software, where do i go from here?
What I'm saying is don't clone the disk that has the files on it to the other disk, just copy the files to the other disk. That should be very simple and straightforward. Disk cloning and file copying are two very different things, done in different ways. Either one would provide you with the necessary backup, but since in this case the cloning program won't work, just do it by copying, instead.
I can't reformat it without deleting it, correct?
Correct. Be absolutely sure that you have successfully copied the files to the backup drive, before reformatting the first drive.
Regards,
-- Al