Impedence issues between the CJ preamp and Pass amp were (and maybe still are) a concern. I raised this issue a while back on another forum and received feedback from several folks (including Kal Rubinson) confirming that the pairing meets the guideline that "the input impedance should exceed the output impedance of its source by 10x or more".Like you, I am uncertain. The 10x factor should be applied to the worst case (maximum) output impedance of the preamp at any audible frequency. For a tube preamp that will commonly be at 20 Hz, due to the output coupling capacitor most (but not all) tube preamps use. Per Stereophile's measurements the original version of the C-J 16LS had a worst case output impedance (at 20 Hz) of 1.8K, and from their comments in the addendum to the review it sounds like the upgrades that were incorporated in the Series 2 version would not have affected that. The manual for your X250 indicates that the input impedance of its balanced inputs is 22K, while not indicating an input impedance for the unbalanced inputs which I presume are provided and you are using. Conceivably the unbalanced input impedance could be half the value of the balanced input, or 11K, which would result in a SLIGHT rolloff of the deepest bass when driven by an output impedance that rises to 1.8K at 20 Hz, while having significantly lower values at higher frequencies.
Re the use of digital equalizers: I did some further checking, and it appears that the two digital outputs of your transport are both 75 ohm coaxial outputs, on an RCA connector and a BNC connector. It also appears that neither the Behringer DEQ2496 or the DSPeaker will accept coaxial digital inputs. Also, the DEQ2496 does not provide unbalanced analog inputs or outputs, so it could not be inserted into a processor/tape loop on your preamp without converting or adapting the signals from unbalanced to balanced form, and back, which would introduce additional cost and/or possible sonic compromise depending on how it is implemented.
The DSPeaker device provides unbalanced analog i/o's, as I and others indicated earlier, and could be readily introduced into one of the processor/tape loops that is provided on your preamp. The one possible issue I see with respect to that approach is that the output impedance of the preamp's processor/tape outputs is not specified, and the input impedance of the DSPeaker's analog inputs appears not to be specified. You might want to contact the two manufacturers to ask them if they can supply those numbers. Although given that the DSPeaker would only be in the signal path when you are listening to the problematic low quality recordings, a less than ideal impedance match may not matter anyway.
Finally, in case you want to consider other kinds of digital equalizers, which could accept the signal from one of the transport's coaxial outputs, I would be cautious about assuming that both outputs can be used simultaneously, unless the manual or other literature explicitly indicates that they can be. It seems conceivable to me that the RCA and BNC connectors might simply be jumpered together inside the rear panel of the transport (rather than being driven by separate output stages), the expectation being that only one of them would be used. In that situation, using both at once would result in a severe impedance mismatch, which would undoubtedly degrade sonics for both outputs.
Hope that helps. Regards,
-- Al