The Clearaudio magnetic bearing arms are far enough away from the VTF scale that it should not affect the measurement at all. However these arms are extremely sensitive to footfalls (or feedback) and require meticulous isolation to work well - but if you’re concrete slab they should be OK.
Yes, it’s perfectly possible the VTF is actually 2.9g and still sounds good. That might even be smoothing over issues with the magnetic arm (which I’m definitely not a fan of - especially the Concept and Clarify models. If he has a Magnify, that one is a hybrid and I like it much better). 2.9g won’t hurt anything in the immediate short term, but you really do want to verify and adjust that down to 2.0g max.