Speaker and amp balance question?????

I just recieved my tweeters back from being matched and I am pleased with the results. What I noticed when I installed the tweeters and played music was that they sounded different so I switched the tweeters from one speaker to the other to find that my tweeters were fine and that the difference in sound was due to something else. In a diagnostic I switches the speaker cables left to right channel and right to left channelon my amp and upon listening I realised that both the channels in my anp(Pass X250) and my speakers crossovers were slightly different from each other and I was able to get the two speakers to sound extremely close to each other by switching the speakers themselves right to left and left to right. I am getting pretty balanced sound but my question is that is it normal for the speakers to be off by a noticable difference(when an inch from the speaker's tweeter). Before one channel was cleaner and one speakers tweeter was cleaner.. In both my amp and my speakers there is one side cleaner than the other so I put the cleaner speaker with the less clean channel of the amp and the less clean speaker with the cleaner side of the amp and the sound is pretty balanced. Are differences to this degree normal?They are subtle and not very noticable if at all noticable from the listening position.In fact you could not hear the differences two feet from the speakers but it was there. If my amp were identical channels the sound would be off and if my speakers were identical sounding I would have a less balanced sounding system. Does this make sense?