Whatever you do, don’t get a subsonic filter, unless of course you want to kill good sound.This is nonsense. I use the cheap DB Systems filters and the loss in fidelity is barely perceptible.
I also discovered that, indeed, "silent" record grooves are not the same.
You discovered that subsonic noise is often cut into the grooves. This is why you're not getting pumping in the runout grooves. I once believed warps were the major culprit. They’re not. It’s usually acoustic feedback and poor album cuts
Read some of the reviews on these:
http://store.acousticsounds.com/d/60042/DB_Systems-DB_Systems_Subsonic_Filter-Turntable_Accessories
At only $20, it can’t hurt to try them. If you like the result, consider investing in the DB-12 or KAB filter.