When you plugged the unit back in, did you have to reset the gain and loading to the proper values, or were they already at the proper values? I wonder if they are displaying the old info, but not operating with those values? Try adjusting the gain and loading away from, and back to, the values you want. You never know.
Also, it may take some time for the circuits to warm up after the unit has been turned off (I'm assuming you leave the unit in stand-by when not using it).
One final thought. Can you associate the diminished highs with a particular channel? Maybe use the balance control and see if you've lost the highs on one of the two channels. If you've lost them on both, that would be a good sign that it's not the fault of the tubes.
Oh, and double check your interconnects.
Oh, and make sure you've not inverted phase.
Oh, and maybe email Jim White for tube recommendations. Aesthetix products have a reputation for being finicky with tube choice.
Cheers.