But here we are talking about using VS to enhance the files created by the DA-3000, and the VS is not used during the recording process, correct?
Correct. You do not need VS to do the recording. VS will allow you to break the file into tracks and name them and also to eliminate the gaps between tracks. For DSD files you cannot do any correction (click removal, hum or hiss removal) without changing to PCM.
I started with DSD but soon found that I wanted to do corrections on most of my albums and went to PCM to do that. At least with my DAC, I do not heard much difference between DSD and PCM. You should try both and see if you can hear the difference.
As a playback device I think the DA-3000 is somewhat limited. From the specs I believe it only takes 64 GB cards or flash drives. That can be limiting when each 5.8 MHz DSD album is over 4 GBs. If you can put a large external drive on it, then you might be OK, although the "user interface" is certainly limited. The usb interface is usb 1.1 according to the specs.