Ozzy, regarding the DEQX calibrations, to be sure it's clear I was envisioning that in addition to the effect of the amp change on the balance between the main speakers and the subs, the DEQX measurements (and the resulting calibrations/corrections) of the DIY mains themselves might change. The reason being differences in impedance interactions between the mains and the very different output impedance of the M-60 vs. the Pass amp.
It sounds, though, like you're intending to re-do the entire DEQX measurement & calibration/correction process, which of course would address this.
Continued best of luck.
-- Al