The speaker cables should indeed not be a problem, unless the cables would be very thin. See here for some data: http://www.audioholics.com/audio-video-cables/speaker-cable-gauge In general, if a speaker cable has to be long, the solution is simple: use a thicker gauge. In your case I doubt this will make any difference.
The most obvious explanation is still room modes, perhaps aggravated by the transmission line design of the speakers.
The most obvious explanation is still room modes, perhaps aggravated by the transmission line design of the speakers.