Partial retraction. OK, I see that if it were the movement of air in the room, caused by your woofers, that was inducing the Helmholtz effect, then shutting down the woofers would possibly reduce the SPLs sufficiently to ameliorate the Helmholtz resonance of your dust cover/TT. I guess I just find it hard to believe that your subwoofers blow around enough air to do that, but I have not been there, as you have. Still, I would take a look at your room frequency response correction devices at the suspect frequencies.
Your microphone test for proving the utility of a dust cover. Isn't that highly dependent upon the room, the speakers, and the proximity of the TT to the speaker? In other words, you could prove it for yourself and your system, but not universally for all situations. I'd move my turntables before employing a dust cover to shield the tonearm/cartridge from SPLs. In addition, what do we know about the importance of the effect you observe, in terms of ultimate fidelity?