@lewm - I have followed and appreciated your investigation and effort to make sense of the evidence, and I agree this is strange. The EAR has rave reviews, and it just seems improbable that Tim de Paravicini with his reputation would make this kind of mistake. Perhaps in the repairs to this EAR the OP talked about something wasn't put back together correctly - or it is a manufacturing defect and they got it backwards in production and put the resistor in the wrong place.
My Creek Integrated is wired up like atmasphere and dover were saying is the correct way, and my other phono stages are either battery powered or do not have an IEC third prong (powered by wall wart) - so I have own nothing personally to verify with - but you mentioned the Manley Steelhead - which in its current iteration has three ground connectors, and they do make a distinction between circuit and chassis ground, with separate ground lugs, and allow the user to make their own choice about the grounding scheme; though I strongly suspect they would not leave the chassis floating in any of them. So I think there is definitely something to what you were talking about at least for some phono stages.