That is a head scratcher. Could say a lot about your dac…I’ve found a difference between inputs on even decent dacs I’ve tried (my own dac vs others $500-$1k range). I upgraded from a decent basic rpi based streamer transport (Allo Digione) to a better designed and optimized rpi based transport (Pi2design Mercury streamer) which fires out I2s, coax, AES, and optical as options - even simultaneously.
Huge difference/improvement with coax, haven’t had the opportunity to try the other outputs yet. My dac is a Toppings D70s. I’d love to say your pre/dac and amp are such stars that it supersedes the quality of signal, however:
a.) I am subject to enormous bias as I own an SPL Elector Pre and I melt over its abilities (big crush on this pre and surely anything made by SPL)
b.) Most find that source tends to dictate much of the resulting sound