As for viruses being serious issue from the beginning (being treated seriously) - you must be kidding?Nope, I'm not. The fact that virus attempts have escalated over the years does not mean they did not exist before.
The first version of Windows (1983) was released about 10 years before the internet became open to the public. It took the commercialization of the internet to give the viruses, worms, trojans and all that a chance to go big time. The fact was Microsoft valued ease-of-use for non-technical consumers more than they valued security.
However, these malicious files work by targeting the operating system and programs. The vast majority of them have targeted Microsoft products. Music files don't do that. There is also the lack of a universal target. What corrupts an iTunes player won't work on a Windows Media Player. You've got a variety of software players plus an array of hardware players out there. Hackers can't get their jollies with one malicious file screwing with 90% of the users as they do with MS computers.
So you're pretty much left with putting a loud noise in a song. Would a commercial label do that? Unlikely; they wouldn't want the lawsuits. So we're kind of back to the risk of music from questionable sources, such as a listener using their megabucks stereo as speakers for listening to a low-bit-rate U-Tube video.
We're back to risk analysis and prioritization. I've had my share of situations with my stereo equipment over the past 35 some-odd years including blown tweeters, damaged styluses, and other things that required repair or maintenance. You are certainly free to worry about this problem to your heart's content, but it is not prominent on my radar screen.
There was an asteroid (2009 DD45) that just missed the earth the other day if you want something big to worry about. ;-)