1. Take your time (as someone else suggested).
2. I agree with the conventional wisdom (?) that the two most important components of a SYSTEM are the room and the speakers. So, spend a disproportionate amount of your budget on your main speakers and setting up and treating the room (to work with the speakers you chose and vice versa)
3. If you have stereo and surround sound ambitions, focus (effort and $$) on getting the 2, 2.1 and 3.1 channels to sound the best they possibly can; and then round out the effects channels and equipment (and add subwoofers, if need be). I believe that L, C and R channels are the most important channels, in terms of sound quality and impact in a HT/surround system.
4. Leave room in the budget for speaker and room correction software/digital processing (whether it comes in the form of computer software, components, built into speakers or some combination thereof). Not everyone agrees, but I think modern speaker/room correction options are really great for tweaking and fine tuning a room/system and getting it just right.
Have fun and keep us posted on your progress, please.
Scott