The issue goes beyond simply the use of different cables as the "standard for balanced line operation" that Ralph often discusses focuses on how audio equipment is designed with respect to grounding and shielding as discussed here.
Could there be sonic differences based solely on whether the equipment is designed to be balanced or single-ended, probably, but how that single difference would affect the sound we hear is something I couldn't predict. If implemented properly, the balanced gear should be have less noise. However, it has not been my experience that fully balanced equipment is immune to all facets of IC cable design such as wire gauge, geometry, shielding, connectors, and materials, but then IME most cable changes are subtle not revelatory, so YMMV.