Maybe try an elliptical?
I had a Dynavector Karat with an elliptical that was 'fat' or full sounding.
If a phono stage doesn't have 'headroom' sometimes the pops and clicks don't attenuate well. I agree with the other poster: if after cleaning you still get them, it's the vinyl.
Maybe try rolling some 6922s in the Manley to get the sound you like? Tons of 6922/6DJ8 to try out there.