Matthew,
I did the SLP 05 Ultimate Upgrade as well, along with the older Tungsten tubes. Maybe that combo with the fuses is the improvements we are hearing. I was afraid to try different directions on the fuses after the original problems so I never tried reversing them. They are as you say hot end going in right to left. fuse info/writing reads from left to right going in to back of power supply. I'd be interested to heare if anyone has tried them reversed and has any opinion. They sound right to my ears the way they are.
Greg